PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g040740.1
Common NameMTR_5g040740
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 411aa    MW: 45099.3 Da    PI: 8.2759
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g040740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24e-20115217398
                      EE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.S CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.s 88 
                      k+ltpsd+++ g +++p ++a+ +      + +k+ s++l+++d +g++W++++ yr+++ r+++t++W+eFv++++L  gD++vF+ +  r  
  Medtr5g040740.1 115 KTLTPSDANNGGAFSVPSECAKLIfppldlQAEKP-SQKLSVTDIHGKEWKLRHVYRGTPLRHLITTNWSEFVDEKKLIGGDSLVFMKKsTRtG 207
                      89*******************888****9744443.469************************************************5523335 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      +++  v+++r
  Medtr5g040740.1 208 TETISVGIHR 217
                      5555666655 PP

2Auxin_resp47.67.5e-17234313183
       Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafetedsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++ a+++++F+vvY+P a ++ +Fvv+++ ve+a+k+k+  G R+k ++ +++ss+r     Gt++++s+      pn +Wr+L+
  Medtr5g040740.1 234 AVELAEKNMAFDVVYYPTAeGWCDFVVNAKVVEDAMKNKWNSGLRIKHSLKKDNSSKRCSnfEGTISALSA------PNRPWRMLE 313
                      678899***********87479***********************************977779*****999......688999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.462113219IPR003340B3 DNA binding domain
SMARTSM010191.4E-11115219IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-27115206IPR015300DNA-binding pseudobarrel domain
CDDcd100173.15E-18115199No hitNo description
PfamPF023622.5E-17115217IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-23115205IPR015300DNA-binding pseudobarrel domain
PfamPF065076.0E-14234312IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MSPQQPIRVD PKIWQCCAGA AVKIPKLNSH VYYFPLGHLE HVSPSPNPST LSLLDRSRQF  60
IPCTVSTVNL LADPVTDEVF VKLLLTPGTN NCVHEPPPEV REDQHDGVKV VSSGKTLTPS  120
DANNGGAFSV PSECAKLIFP PLDLQAEKPS QKLSVTDIHG KEWKLRHVYR GTPLRHLITT  180
NWSEFVDEKK LIGGDSLVFM KKSTRTGTET ISVGIHRQKF GAATKIAEKS VTEAVELAEK  240
NMAFDVVYYP TAEGWCDFVV NAKVVEDAMK NKWNSGLRIK HSLKKDNSSK RCSNFEGTIS  300
ALSAPNRPWR MLEVRTAKDS ALHNDIERDS SIPKIKFHSS TTRSFNEASL NSNALLHDTA  360
STSSNCNTKK LSPGSIMLFG QIIRPVGSDL HDSDIKGEDG GKGCNENCLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-421232222341Auxin response factor 1
4ldy_B1e-421232222341Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1469710.0AC146971.16 Medicago truncatula clone mth2-128d1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613775.10.0auxin response factor 1
TrEMBLG7KF870.0G7KF87_MEDTR; Auxin response factor
STRINGGLYMA13G02410.13e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16207210
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-81auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]